References Installation
Last updated
Was this helpful?
Last updated
Was this helpful?
For decompression of FASTQ.ORA derived from specific species/models, the reference that has been used at compression needs to be downloaded from the . The whole reference database can also be downloaded.
1. Move the downloaded archive to the oradata
directory
2. Navigate to the oradata
directory
3. Extract the archive file using the following command:
When the extraction of the specific reference is completed on Linux OS, the orad.2.7.0.linux
folder should be structured as follows with example on gallus_gallus reference:
orad.2.7.0.linux
|___orad
|___oradata
|___refbin
|___Gallus_gallus
|___refbin
|___readme_gallus_gallus
1. Move the downloaded archive to the orad.2.7.0.linux
directory
2. Navigate to the orad.2.7.0.linux
directory
3. Delete existing oradata folder
4. Extract the archive file using the following command:
When the extraction of the full database is completed the orad.2.7.0.linux
folder should be structured as follows:
orad.2.7.0.linux
|___orad
|___oradata
|___Homo_sapiens
|___refbin
|___readme_homo_sapiens
|___Homo_sapiens_bisulfite
|___refbin
|___readme_homo_sapiens_bisulfite
|___<Genus_specificname>
|___refbin
|___ readme_<Genus_specificname>
Extract the downloaded archive with a software that can handle gziped tarballs, such as 7-Zip. Right-click on the archive and select Extract with.
When a specific reference is downloaded, a folder with name <Genus_specifcname>
is extracted. This folder contains the corresponding refbin
and readme
files. Move this folder in the location where orad and the default human refbin
file has been extracted during the installation of the DRAGEN ORA Decompression Software procedure.
When the full database is downloaded, a folder with name oradata
is extracted. This folder contains subfolders for each specific species which contains the corresponding refbin
and readme
files. Move this oradata
folder in the location where orad and the default human refbin
has been extracted during the installation of the DRAGEN ORA Decompression Software procedure.